Preface |
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xi | |
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xiii | |
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xvii | |
Symbols and abbreviations |
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xix | |
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1 | (16) |
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1 | (4) |
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5 | (7) |
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1.3 Using event trees to describe populations |
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12 | (2) |
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1.4 How we have arranged the material in this book |
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14 | (2) |
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16 | (1) |
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2 Bayesian inference using graphs |
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17 | (28) |
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2.1 Inference on discrete statistical models |
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17 | (11) |
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2.1.1 Two common sampling mass functions |
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20 | (1) |
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2.1.2 Two prior-to-posterior analyses |
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20 | (4) |
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2.1.3 Poisson-Gamma and Multinomial--Dirichlet |
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24 | (2) |
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2.1.4 MAP model selection using Bayes Factors |
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26 | (2) |
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2.2 Statistical models and structural hypotheses |
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28 | (5) |
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2.2.1 An example of competing models |
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29 | (2) |
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2.2.2 The parametric statistical model |
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31 | (2) |
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2.3 Discrete Bayesian networks |
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33 | (10) |
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2.3.1 Factorisations of probability mass functions |
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33 | (3) |
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2.3.2 The d-separation theorem |
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36 | (1) |
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2.3.3 DAGs coding the same distributional assumptions |
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37 | (1) |
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2.3.4 Estimating probabilities in a BN |
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38 | (2) |
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2.3.5 Propagating probabilities in a BN |
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40 | (3) |
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43 | (1) |
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44 | (1) |
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45 | (28) |
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3.1 Models represented by tree graphs |
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45 | (9) |
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46 | (4) |
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50 | (4) |
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3.2 The semantics of the Chain Event Graph |
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54 | (5) |
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3.3 Comparison of stratified CEGs with BNs |
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59 | (7) |
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3.4 Examples of CEG semantics |
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66 | (3) |
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66 | (1) |
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67 | (1) |
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3.4.3 The square-free CEG |
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68 | (1) |
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3.5 Some related structures |
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69 | (2) |
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71 | (2) |
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73 | (34) |
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4.1 Encoding qualitative belief structures with CEGs |
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73 | (15) |
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4.1.1 Vertex- and edge-centred events |
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74 | (3) |
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77 | (2) |
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4.1.3 Conditioning in CEGs |
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79 | (2) |
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4.1.4 Vertex-random variables, cuts and independence |
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81 | (7) |
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4.2 CEG statistical models |
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88 | (18) |
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4.2.1 Parametrised subsets of the probability simplex |
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90 | (4) |
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94 | (6) |
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4.2.3 The resize operator |
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100 | (2) |
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4.2.4 The class of all statistically equivalent staged trees |
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102 | (4) |
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106 | (1) |
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5 Estimation and propagation on a given CEG |
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107 | (30) |
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5.1 Estimating a given CEG |
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107 | (15) |
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5.1.1 A conjugate analysis |
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108 | (2) |
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5.1.2 How to specify a prior for a given CEG |
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110 | (3) |
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5.1.3 Example: Learning liver and kidney disorders |
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113 | (5) |
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5.1.4 When sampling is not random |
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118 | (4) |
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5.2 Propagating information on trees and CEGs |
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122 | (12) |
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5.2.1 Propagation when probabilities are known |
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123 | (6) |
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5.2.2 Example: Propagation for liver and kidney disorders |
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129 | (2) |
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5.2.3 Propagation when probabilities are estimated |
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131 | (2) |
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5.2.4 Some final comments |
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133 | (1) |
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134 | (3) |
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6 Model selection for CEGs |
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137 | (28) |
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6.1 Calibrated priors over classes of CEGs |
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139 | (2) |
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6.2 Log-posterior Bayes Factor scores |
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141 | (2) |
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6.3 CEG greedy and dynamic programming search |
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143 | (11) |
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6.3.1 Greedy SCEG search using AHC |
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144 | (4) |
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6.3.2 SCEG exhaustive search using DP |
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148 | (6) |
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6.4 Technical advances for SCEG model selection |
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154 | (9) |
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6.4.1 DP and AHC using a block ordering |
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154 | (3) |
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6.4.2 A pairwise moment non-local prior |
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157 | (6) |
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163 | (2) |
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7 How to model with a CEG: A real-world application |
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165 | (28) |
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7.1 Previous studies and domain knowledge |
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167 | (5) |
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7.2 Searching the CHDS dataset with a variable order |
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172 | (5) |
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7.3 Searching the CHDS dataset with a block ordering |
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177 | (6) |
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7.4 Searching the CHDS dataset without a variable ordering |
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183 | (3) |
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7.5 Issues associated with model selection |
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186 | (6) |
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7.5.1 Exhaustive CEG model search |
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186 | (1) |
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7.5.2 Searching the CHDS dataset using NLPs |
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187 | (1) |
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7.5.3 Setting a prior probability distribution |
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188 | (4) |
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192 | (1) |
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8 Causal inference using CEGs |
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193 | (28) |
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8.1 Bayesian networks and causation |
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194 | (7) |
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8.1.1 Extending a BN to a causal BN |
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195 | (2) |
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8.1.2 Problems of describing causal hypotheses using a BN |
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197 | (4) |
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8.2 Defining a do-operation for CEGs |
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201 | (7) |
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8.2.1 Composite manipulations |
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203 | (2) |
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8.2.2 Example: student housing situation |
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205 | (3) |
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8.2.3 Some special manipulations of CEGs |
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208 | (1) |
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208 | (7) |
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8.3.1 When a CEG can legitimately be called causal |
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209 | (1) |
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8.3.2 Example: Manipulations of the CHDS |
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209 | (5) |
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214 | (1) |
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8.4 Causal discovery algorithms for CEGs |
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215 | (3) |
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218 | (3) |
References |
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221 | (10) |
Index |
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231 | |