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El. knyga: Clostridium difficile: Methods and Protocols

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  • Formatas: PDF+DRM
  • Serija: Methods in Molecular Biology 1476
  • Išleidimo metai: 09-Aug-2016
  • Leidėjas: Humana Press Inc.
  • Kalba: eng
  • ISBN-13: 9781493963614
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  • Formatas: PDF+DRM
  • Serija: Methods in Molecular Biology 1476
  • Išleidimo metai: 09-Aug-2016
  • Leidėjas: Humana Press Inc.
  • Kalba: eng
  • ISBN-13: 9781493963614
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This second edition provides 21 new chapters on methods used in laboratories for investigating the physiology and molecular genetics of the pathogen Clostridium difficile. Chapters detail up-to -date experimental techniques for gene editing and transcriptional analysis which are used to investigate the fundamental biology of the organism and its virulence factors.  Additional chapters  describe development of potential new treatments including vaccines, bacteriophage and faecal transplantation. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and cutting-edge, Clostridium difficile: Methods and Protocols, Second Edition provides a comprehensive catalogue of molecular tools and techniques authored by the researchers who have developed them.

Preface v
Contributors ix
1 Restriction Endonuclease Analysis Typing of Clostridium difficile Isolates
1(14)
Susan P. Sambol
Stuart Johnson
Dale N. Gerding
2 Direct PCR-ribotyping of Clostridium difficile
15(8)
Sandra Janezic
3 From FASTQ to Function: In Silico Methods for Processing Next-Generation Sequencing Data
23(12)
Mark D. Preston
Richard A. Stabler
4 Clostridium difficile Genome Editing Using pyrE Alleles
35(18)
Muhammad Ehsaan
Sarah A. Kuehne
Nigel P. Minton
5 Use of mCherryOpt Fluorescent Protein in Clostridium difficile
53(16)
Eric M. Ransom
David S. Weiss
Craig D. Ellermeier
6 A Fluorescent Reporter for Single Cell Analysis of Gene Expression in Clostridium difficile
69(22)
Carolina Picarra Cassona
Fatima Pereira
Monica Serrano
Adriano O. Henriques
7 Clostridium difficile Adhesins
91(12)
Severine Pechine
Cecile Deneve-Larrazet
Anne Collignon
8 Intestinal Epithelial Cell Response to Clostridium difficile Flagella
103(14)
Jameel Batah
Imad Kansau
9 Isolating and Purifying Clostridium difficile Spores
117(12)
Adrianne N. Edwards
Shonna M. McBride
10 Inducing and Quantifying Clostridium difficile Spore Formation
129(14)
Aimee Shen
Kelly A. Fimlaid
Keyan Pishdadian
11 Characterization of Functional Prophages in Clostridium difficile
143(24)
Ognjen Sekulovic
Louis-Charles Fortier
12 Induction and Purification of C. difficile Phage Tail-Like Particles
167(10)
John P. Hegarty
William Sangster
Robert E. Ashley
Roland Myers
Susan Hafenstein
David B. Stewart
13 Phage Transduction
177(10)
Shan Goh
14 Transfer of Clostridium difficile Genetic Elements Conferring Resistance to Macrolide--Lincosamide--Streptogramin B (MLSB) Antibiotics
187(12)
Fabrizio Barbanti
Francois Wasels
Patrizia Spigaglia
15 Methods for Determining Transfer of Mobile Genetic Elements in Clostridium difficile
199(16)
Priscilla Johanesen
Dena Lyras
16 Investigating Transfer of Large Chromosomal Regions Containing the Pathogenicity Locus Between Clostridium difficile Strains
215(8)
Michael S. M. Brouwer
Peter Mullany
Elaine Allan
Adam P. Roberts
17 An In Vitro Model of the Human Colon: Studies of Intestinal Biofilms and Clostridium difficile Infection
223(12)
Grace S. Crowther
Mark H. Wilcox
Caroline H. Chilton
18 MiniBioReactor Arrays (MBRAs) as a Tool for Studying C. difficile Physiology in the Presence of a Complex Community
235(24)
Jennifer M. Auchtung
Catherine D. Robinson
Kylie Farrell
Robert A. Britton
19 A Practical Method for Preparation of Fecal Microbiota Transplantation
259(10)
Elizabeth Perez
Christine H. Lee
Elaine O. Petrof
20 Ion-Exchange Chromatography to Analyze Components of a Clostridium difficile Vaccine
269(10)
Richard R. Rustandi
Feng Wang
Catherine Lancaster
Adam Kristopeit
David S. Thiriot
Jon H. Heinrichs
21 A Size Exclusion Chromatography Method for Analysis of Clostridium difficile Vaccine Toxins
279(10)
Catherine Lancaster
Richard R. Rustandi
Paola Pannizzo
Sha Ha
Index 289