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El. knyga: Diatom Microscopy [Wiley Online]

Edited by (Bard College, New York), Edited by (National Yang-Ming University, Taiwan)
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Diatom MicroscopyDidesnis paveikslėlis
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Partnerių interneto svetainė: https://onlinelibrary.wiley.com/doi/book/10.1002/9781119711568
DIATOM MICROSCOPY The main goal of the book is to demonstrate the wide variety of microscopy methods being used to investigate natural and altered diatom structures.

This book on Diatom Microscopy gives an introduction to the wide panoply of microscopy methods being used to investigate diatom structure and biology, marking considerable advances in recent technology including optical, fluorescence, confocal and electron microscopy, surface-enhanced Raman spectroscopy (SERS), atomic force microscopy (AFM) and spectroscopy as applied to diatoms. Each chapter includes a tutorial on a microscopy technique and reviews its applications in diatom nanotechnology and diatom research. The number of diatomists, diatom research, and their publications are increasing rapidly. Although many books have dealt with various aspects of diatom biotechnology, nanotechnology, and morphology, to our knowledge, no volume exists that summarizes advanced microscopic approaches to diatoms.

Audience





The intended audience is academic and industry researchers as well as graduate students working on diatoms and diatom nanotechnology, including biosensors, biomedical engineering, solar panels, batteries, drug delivery, insect control, and biofuels.
Preface xi
1 Investigation of Diatoms with Optical Microscopy 1(32)
Shih-Ting Lin
Ming-Xin Lee
Guan-Yu Zhuo
1.1 Introduction
2(2)
1.2 Light Microscopy
4(6)
1.2.1 Phase Contrast Microscopy
4(2)
1.2.2 Differential Interference Contrast (DIC) Microscopy
6(3)
1.2.3 Darkfield Microscopy
9(1)
1.3 Fluorescence Microscopy
10(2)
1.4 Confocal Laser Scanning Microscopy
12(7)
1.5 Multiphoton Microscopy
19(3)
1.6 Super-Resolution Optical Microscopy
22(3)
1.7 Conclusion
25(1)
Acknowledgement
25(1)
References
25(8)
2 Nanobioscience Studies of Living Diatoms Using Unique Optical Microscopy Systems 33(24)
Kazuo Umemura
Abbreviations
33(2)
2.1 Trajectory Analysis of Gliding Among Individual Diatom Cells Using Microchamber Systems
35(5)
2.2 Direct Observation of Floating Phenomena of Individual Diatoms Using a "Tumbled" Microscope System
40(4)
2.3 Three-Dimensional Physical Imaging of Living Diatom Cells Using a Holographic Microscope System
44(3)
Acknowledgements
47(1)
References
47(10)
3 Recent Insights Into the Ultrastructure of Diatoms Using Scanning and Transmission Electron-Microscopy 57(24)
Dharshini Gopal
Shweta Chakrabarti
Dataram Venkata Srikar Keshav
Richard Gordon
Nirmal Mazumder
3.1 Introduction
58(1)
3.2 Scanning Electron Microscopy (SEM) of Diatoms
58(7)
3.3 Transmission Electron Microscopy (TEM) of Diatoms
65(8)
3.3.1 Limitations
69(4)
3.4 Conclusion
73(1)
References
73(8)
4 Atomic Force Microscopy Study of Diatoms 81(30)
Ishita Chakraborty
Shweta Chakrabarti
Vishwanath Managuli
Nirmal Mazumder
4.1 Introduction
82(4)
4.2 Types of AFM Modes
86(2)
4.3 Sample Preparation and Methods
88(1)
4.4 Study of Diatom Ultrastructure Under AFM
88(14)
4.5 Conclusion
102(2)
Glossary
104(1)
Acknowledgement
104(1)
References
105(6)
5 Refractive Index Tomography for Diatom Analysis 111(28)
Juan M. Soto
Jose A. Rodrigo
Tatiana Alieva
5.1 Introduction
112(1)
5.2 Fundamentals of PC-ODT
113(4)
5.3 Experimental Setup for PC-ODT
117(3)
5.4 Diatom RI Reconstructions with Bright-Field Illumination
120(6)
5.5 Illumination Impact on PC-ODT Performance
126(5)
5.6 Concluding Remarks
131(3)
Acknowledgement
134(1)
References
134(5)
6 Luminescent Diatom Frustules: A Review on the Key Research Applications 139(40)
Jayur Tisso
Shruthi Shetty
Nirmal Mazumder
Ankur Gogoi
Gazi A. Ahmed
6.1 Introduction
140(1)
6.2 Key Research Applications of Luminescence Properties of Diatom Frustules
141(26)
6.2.1 Novel Nanophotonic and Optoelectronic Applications of Luminescent Diatom Frustules
142(3)
6.2.2 Applications of Diatom Luminescence in Sensing
145(4)
6.2.3 Biomedical Applications of Diatom Luminescence
149(2)
6.2.4 Other Studies on Diatom Luminescence
151(16)
6.3 Future Perspectives
167(1)
6.4 Conclusion
168(1)
Acknowledgement
168(1)
References
168(11)
7 Micro to Nano Ornateness of Diatoms from Geographically Distant Origins of the Globe 179(42)
Mohd Jahir Khan
Daniel Mathys
Vandana Vinayak
7.1 Introduction
180(3)
7.2 Materials and Methods
183(2)
7.2.1 Diatom Samples and Microscopy
183(2)
7.2.1.1 By Michael J. Stringer
183(1)
7.2.1.2 Diatom Oamaru Slides by Diane Winter
184(1)
7.2.1.3 By Daniel Mathys
184(1)
7.2.1.4 Diatom Sampling, Slide Preparation and Imaging from Himalayas, Plains and Arabian Sea, India
185(1)
7.3 Diatoms from Different Geographical Origins of the World
185(31)
7.3.1 Oamaru Diatoms
185(1)
7.3.2 Diatom Images Gifted by Michael J. Stringer
186(4)
7.3.3 Diatoms from Natural History Museum Basel, Switzerland a Piece of Art by Daniel Mathys
190(3)
7.3.4 Diatoms from India
193(23)
7.4 Conclusion
216(1)
Acknowledgements
216(1)
References
216(5)
8 Types of X-Ray Techniques for Diatom Research 221(16)
Mridula Sunder
Neha Acharya
Smitha Nayak
Richard Gordon
Nirmal Mazumder
8.1 Introduction
221(1)
8.2 Applications
222(11)
8.2.1 Synchrotron Radiation-Based X-Ray Techniques
222(2)
8.2.2 X-Ray Computed Tomography
224(2)
8.2.3 X-Ray Fluorescence-Based Techniques
226(1)
8.2.4 X-Ray Microanalysis
227(1)
8.2.5 X-Ray Absorption-Based Techniques
228(1)
8.2.6 X-Ray Diffraction
229(1)
8.2.7 Other X-Ray-Based Techniques
230(3)
8.3 Conclusions
233(1)
Glossary
233(1)
References
234(3)
9 Diatom Assisted SERS 237(14)
Rajib Biswas
Sankar Biswas
9.1 Introduction
237(2)
9.2 Diatom
239(2)
9.2.1 Basic Overview
239(1)
9.2.2 Physiological Characteristics
239(1)
9.2.3 Optical and Relevant Properties
240(1)
9.3 Raman Scattering
241(2)
9.3.1 Basics
241(1)
9.3.2 Surface Enhanced Raman Scattering
242(1)
9.3.3 Optoelectronic Investigations
242(1)
9.4 SERS Through Diatom: Fundamentals and Application Overview
243(2)
9.5 Conclusion and Future Outlook
245(1)
References
246(5)
10 Diatoms as Sensors and Their Applications 251(32)
Priyasha De
Nirmal Mazumder
10.1 Introduction
251(4)
10.2 Diatoms as Biosensors
255(21)
10.2.1 Electrochemical Sensors
260(1)
10.2.2 Plasmonic Sensors
261(3)
10.2.3 Immunoassay Sensors
264(4)
10.2.4 Optical and Optofluidic Sensors
268(3)
10.2.5 Biochemical Sensors
271(2)
10.2.6 FRET-Based Sensors
273(1)
10.2.7 Microfluidics-Based Sensors
274(2)
10.3 Conclusion
276(1)
Acknowledgments
276(1)
References
277(6)
11 Diatom Frustules: A Transducer Platform for Optical Detection of Molecules 283(24)
S. Viji
N. Ponpandian
C. Viswanathan
11.1 Introduction
284(1)
11.2 Optical Properties of Diatom Frustules
285(5)
11.2.1 Diatom as a Photoluminescent Materials
285(2)
11.2.2 Diatom as a Photonic Crystal
287(1)
11.2.3 Diatoms as a SERS Substrate
288(2)
11.3 Methods Involved in Thin Film Deposition of Diatom Frustules
290(4)
11.4 Diatom as an Optical Transducer for Biosensors
294(3)
11.5 Diatom as an Optical Transducer for Gas/Chemical Sensors
297(3)
11.6 Conclusion
300(1)
References
301(6)
12 Effects of Light on Physico-Chemical Properties of Diatoms 307(28)
Janardan Sen
Priyal Dhawan
Priyasha De
Nirmal Mazumder
12.1 Introduction
308(2)
12.2 Effect of Light on Diatom Function and Morphology
310(20)
12.2.1 Effect of Light Intensity on Diatom Morphology
310(3)
12.2.2 Effect of Light Intensity on Diatom Growth
313(5)
12.2.3 Effect of Light Intensity on Photosynthesis in Diatoms
318(3)
12.2.4 Effect of Wavelength of Light on Diatom Pigment System
321(6)
12.2.5 Effect of Light Intensity on the Physiology of Diatoms
327(3)
12.3 Conclusion
330(1)
Acknowledgment
330(1)
References
330(5)
Index 335
Nirmal Mazumder obtained his PhD degree in 2013 from National Yang-Ming University, Taiwan. He has two years of post-doctoral research experience. In 2016, he joined the Department of Biophysics, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, India as an assistant professor. His research interests relate to the development of Stokes-Mueller-based light microscopy for tissue characterization and deep learning. He also investigates the photonics properties of diatoms as well as frustules for bio-photonics applications. He has published several peer-reviewed journal articles and book chapters.

Richard Gordons involvement with diatoms goes back to 1970 with his capillarity model for their gliding motility, published in the Proceedings of the National Academy of Sciences of the United States of America. He later worked on a diffusion-limited aggregation model for diatom morphogenesis, which led to the first paper ever published on diatom nanotechnology in 1988. He organized the first workshop on diatom nanotech in 2003.
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