Preface |
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v | |
List of common acronyms |
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xix | |
Glossary |
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xxiii | |
1 Parasites and their significance |
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1 | (8) |
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1 | (2) |
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1.2 Some lessons provided by yellow fever |
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3 | (3) |
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1.2.1 Parasites have different life cycles and transmission modes |
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3 | (2) |
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1.2.2 Not all host individuals, and not all parasite strains, are the same |
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5 | (1) |
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1.2.3 Physiological and molecular mechanisms underlie the infection |
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5 | (1) |
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1.2.4 Parasites and hosts are populations |
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6 | (1) |
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1.2.5 Parasites can be controlled when we understand them |
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6 | (1) |
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1.3 Parasites are not a threat of the past |
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6 | (3) |
2 The study of evolutionary parasitology |
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9 | (10) |
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2.1 The evolutionary process |
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9 | (3) |
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2.2 Questions in evolutionary biology |
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12 | (1) |
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2.3 Selection and units that evolve |
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12 | (3) |
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15 | (1) |
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16 | (3) |
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16 | (1) |
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2.5.2 Evolutionarily stable strategies (ESS) |
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17 | (1) |
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2.5.3 Comparative studies |
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17 | (4) |
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Box 2.1 The basic evolutionary forces |
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11 | (2) |
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Box 2.2 The disease space |
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13 | (6) |
3 The diversity and natural history of parasites |
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19 | (32) |
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3.1 The ubiquity of parasites |
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19 | (2) |
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3.2 A systematic overview of parasites |
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21 | (13) |
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21 | (1) |
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22 | (2) |
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23 | (1) |
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23 | (1) |
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3.2.3 The basal eukaryotes |
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24 | (1) |
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25 | (2) |
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27 | (1) |
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3.2.6 Nematodes (roundworms) |
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28 | (1) |
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29 | (1) |
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30 | (1) |
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31 | (1) |
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31 | (2) |
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3.2.11 Mites (Acari), ticks, lice (Mallophaga, Anoplura) |
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33 | (1) |
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3.2.12 Parasitic insects (parasitoids) |
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34 | (1) |
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3.3 The evolution of parasitism |
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34 | (3) |
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3.3.1 Evolution of viruses |
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35 | (1) |
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3.3.2 Evolution of parasitism in nematodes |
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36 | (1) |
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3.4 The diversity and evolution of parasite life cycles |
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37 | (14) |
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3.4.1 Steps in a parasite's life cycle |
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37 | (2) |
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3.4.2 Ways of transmission |
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39 | (1) |
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3.4.3 Complex life cycles |
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40 | (1) |
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3.4.4 The evolution of complex parasite life cycles |
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41 | (4) |
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3.4.5 Example: trypanosomes |
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45 | (1) |
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46 | (5) |
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Box 3.1 Types of parasites |
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20 | (31) |
4 The natural history of defences |
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51 | (58) |
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51 | (8) |
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4.1.1 Pre-infection defences |
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52 | (2) |
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4.1.1.1 Avoidance behaviour |
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52 | (1) |
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4.1.1.2 The selfish herd and group-living |
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52 | (1) |
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4.1.1.3 Anticipatory defences |
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52 | (2) |
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4.1.1.4 'Genetic' defences |
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54 | (1) |
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4.1.2 Post-infection defences |
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54 | (3) |
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4.1.2.1 Behavioural changes |
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54 | (2) |
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4.1.2.2 Physiological responses |
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56 | (1) |
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57 | (2) |
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4.2 Basic elements of the immune defence |
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59 | (9) |
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60 | (2) |
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60 | (1) |
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60 | (1) |
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4.2.1.3 Other humoral components |
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61 | (1) |
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62 | (6) |
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4.2.2.1 Haematopoiesis (cell development) |
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63 | (2) |
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65 | (2) |
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4.2.2.3 Melanization, encapsulation |
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67 | (1) |
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4.2.2.4 Clotting, nodule formation |
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67 | (1) |
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4.3 Basic defences by the immune system |
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68 | (4) |
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68 | (1) |
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68 | (1) |
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4.3.3 Adaptive (acquired) immunity |
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69 | (1) |
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4.3.4 Regulation of the immune response |
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69 | (3) |
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4.3.4.1 Regulation by protein-protein interactions |
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70 | (1) |
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4.3.4.2 Regulation by miRNAs |
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70 | (1) |
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4.3.4.3 Regulation by post-translational modification |
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70 | (2) |
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4.3.4.4 Negative regulation |
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72 | (1) |
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4.4 Immune defence protein families |
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72 | (5) |
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74 | (2) |
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4.4.2 Effectors: antimicrobial peptides |
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76 | (1) |
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4.5 The generation of diversity in recognition |
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77 | (8) |
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4.5.1 Polymorphism in the germline |
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78 | (1) |
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4.5.2 Somatic generation of diversity |
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78 | (3) |
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4.5.2.1 Alternative splicing |
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78 | (1) |
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4.5.2.2 Somatic DNA modification |
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79 | (2) |
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4.5.2.3 Somatic (hyper-)mutation, gene conversion |
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81 | (1) |
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4.5.3 Variability and B- and T-cells |
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81 | (4) |
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81 | (3) |
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84 | (1) |
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4.6 The diversity of immune defences |
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85 | (11) |
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85 | (4) |
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4.6.2 Defence in invertebrates |
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89 | (3) |
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89 | (2) |
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91 | (1) |
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4.6.3 The jawed (higher) vertebrates |
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92 | (4) |
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4.7 Memory in immune systems |
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96 | (4) |
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4.7.1 Memory in the adaptive system |
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98 | (1) |
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4.7.2 Memory in innate systems |
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98 | (2) |
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100 | (4) |
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4.8.1 Assembly, structure, and location of the microbiota |
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100 | (2) |
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4.8.2 Mechanisms of defence by the microbiota |
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102 | (2) |
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4.9 Evolution of the immune system |
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104 | (5) |
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4.9.1 Recognition of non-self |
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104 | (1) |
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4.9.2 The evolution of signal transduction and effectors |
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104 | (1) |
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4.9.3 The evolution of adaptive immunity |
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105 | (4) |
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Box 4.1 Disease space: defences |
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54 | (32) |
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Box 4.2 Adaptive immunity in prokaryotes: the CRISPR-Cas system |
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86 | (4) |
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Box 4.3 Antiviral defence of invertebrates |
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90 | (7) |
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Box 4.4 Priming and memory |
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97 | (12) |
5 Ecological immunology |
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109 | (34) |
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5.1 Variation in parasitism |
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109 | (6) |
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5.1.1 Variation caused by external factors |
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109 | (1) |
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5.1.2 Variation in immune responses |
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110 | (5) |
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5.2 Ecological immunology: The costs of defence |
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115 | (9) |
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115 | (3) |
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5.2.2 Defence costs related to life history and behaviour |
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118 | (1) |
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5.2.3 Cost of evolving an immune defence |
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118 | (3) |
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5.2.3.1 Genetic costs associated with the evolution of immune defences |
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118 | (2) |
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5.2.3.2 Physiological costs associated with the evolution (maintenance) of immune defences |
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120 | (1) |
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5.2.4 Cost of using immune defences |
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121 | (3) |
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5.2.4.1 Genetic costs associated with the deployment of immune defences |
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121 | (1) |
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5.2.4.2 Physiological costs associated with the deployment of immune defences |
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122 | (1) |
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5.2.4.3 Costs due to immunopathology |
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123 | (1) |
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5.3 The nature of defence costs |
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124 | (4) |
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5.3.1 What is the limiting resource? |
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124 | (3) |
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125 | (1) |
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5.3.1.2 Food and nutrients |
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126 | (1) |
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5.3.2 Regulation of allocation |
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127 | (1) |
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5.4 Measurement and fitness effects of immune defence |
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128 | (2) |
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5.5 Tolerance as defence element |
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130 | (4) |
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5.5.1 Defining and measuring tolerance |
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130 | (1) |
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5.5.2 Mechanisms of tolerance |
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131 | (2) |
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5.5.3 Selection and evolution of tolerance |
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133 | (1) |
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5.6 Strategies of immune defence |
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134 | (9) |
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5.6.1 General considerations |
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134 | (2) |
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5.6.2 Defence and host life span |
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136 | (2) |
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5.6.3 Specific vs general defence |
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138 | (1) |
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5.6.4 Constitutive vs induced defence |
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138 | (1) |
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139 | (4) |
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Box 5.1 Disease space and costs of defence |
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111 | (18) |
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Box 5.2 Measures of host defence |
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129 | (11) |
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Box 5.3 Structurally robust immune defences |
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140 | (3) |
6 Parasites, immunity, and sexual selection |
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143 | (16) |
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6.1 Differences between the sexes |
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143 | (4) |
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6.1.1 Differences in susceptibility to parasites |
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143 | (1) |
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6.1.2 Differences in immune function |
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143 | (2) |
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6.1.3 The role of sex hormones |
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145 | (2) |
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6.2 Parasitism and sexual selection |
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147 | (12) |
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147 | (3) |
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6.2.2 Males indicate the quality of resisting parasites |
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150 | (4) |
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6.2.2.1 The Hamilton-Zuk hypothesis |
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150 | (2) |
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6.2.2.2 The immunocompetence handicap hypothesis |
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152 | (2) |
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6.2.3 Male genotypes and benefits for resistance |
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154 | (6) |
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6.2.3.1 Heterozygosity advantage |
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154 | (1) |
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155 | |
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148 | (11) |
7 Specificity |
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159 | (24) |
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7.1 Parasite specificity and host range |
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160 | (7) |
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7.1.1 Measuring parasite specificity and host range |
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160 | (6) |
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7.1.1.1 Observation of infections |
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160 | (3) |
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7.1.1.2 Screening with genetic tools |
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163 | (1) |
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7.1.1.3 Experimental infections |
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163 | (3) |
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7.1.2 Characteristics of a host |
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166 | (1) |
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7.1.3 Evolution of parasite specificity and host range |
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166 | (1) |
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7.2 Factors affecting the host range |
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167 | (5) |
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7.2.1 Biogeographical factors |
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167 | (2) |
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7.2.1.1 Parasite geographic distribution |
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167 | (1) |
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7.2.1.2 Spatial heterogeneity |
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168 | (1) |
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7.2.2 Phylogeny and available time |
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169 | (1) |
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7.2.2.1 Constraints by host phylogen |
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169 | (1) |
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7.2.2.2 Phylogenetic age of groups |
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169 | (1) |
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7.2.2.3 Constraints by parasite group |
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169 | (1) |
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7.2.3 Epidemiological processes |
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169 | (1) |
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7.2.3.1 Transmission opportunities |
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169 | (1) |
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7.2.3.2 Differences in host predictability |
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170 | (1) |
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7.2.3.3 Transmission mode |
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170 | (1) |
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7.2.4 Constraints set by life history |
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170 | (1) |
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7.2.4.1 Host body size and longevity |
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170 | (1) |
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7.2.4.2 Complexity of the life cycle |
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171 | (1) |
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7.2.4.3 Selection regimes within the parasite's life cycle |
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171 | (1) |
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7.2.5 Virulence and defence |
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171 | (1) |
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7.2.5.1 Virulence of the parasite |
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171 | (1) |
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7.2.5.2 Immune defences and defensive symbionts |
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172 | (1) |
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7.3 Specific host defences |
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172 | (1) |
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7.3.1 Specificity beyond the immune system |
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172 | (1) |
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7.3.1.1 Behavioural defences |
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172 | (1) |
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7.3.1.2 Other non-immunological defences |
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173 | (1) |
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7.3.2 Specificity of immune systems |
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173 | (1) |
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7.4 Memory, transgenerational protection |
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173 | (8) |
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7.4.1 Evolution of memory and immune priming |
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173 | (3) |
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7.4.2 Transgenerational immune priming (TGIP) |
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176 | (5) |
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7.5 Adaptive diversity and cross-reactivity |
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181 | (2) |
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Box 7.1 Specificity in defence space |
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159 | (2) |
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Box 7.2 Host specificity indices |
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161 | (22) |
8 Parasite immune evasion and manipulation of host phenotype |
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183 | (30) |
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8.1 Parasites manipulate their hosts |
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183 | (1) |
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8.2 The diversity of immune evasion mechanisms |
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184 | (12) |
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184 | (1) |
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8.2.2 Active interference |
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185 | (6) |
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8.2.3 Functional targets of immune evasion |
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191 | (5) |
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8.2.3.1 Escape recognition |
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191 | (1) |
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8.2.3.2 Evasion of early responses |
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191 | (1) |
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8.2.3.3 Manipulate the signalling network |
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192 | (2) |
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8.2.3.4 Avoid being killed by effectors |
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194 | (1) |
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8.2.3.5 Manipulation of auxiliary mechanisms |
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194 | (1) |
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8.2.3.6 Microbiota as a target |
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195 | (1) |
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8.3 Manipulation of the host phenotype |
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196 | (11) |
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8.3.1 Extending infection life span (parasite survival) |
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196 | (3) |
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8.3.1.1 Fecundity reduction |
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196 | (1) |
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196 | (3) |
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8.3.1.3 Changes of the social context |
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199 | (1) |
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8.3.2 Manipulation of the host phenotype to increase transmission |
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199 | (4) |
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8.3.2.1 Transmission site |
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199 | (3) |
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8.3.2.2 Transmission to a next host |
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202 | (1) |
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8.3.2.3 Transmission by vectors |
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202 | (1) |
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8.3.3 Change of host morphology |
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203 | (2) |
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8.3.3.1 Colouration and odour |
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203 | (1) |
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8.3.3.2 Morphology and feminization |
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203 | (2) |
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8.3.4 Affecting transmission routes |
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205 | (1) |
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8.3.5 Affecting social behaviour |
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206 | (1) |
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8.3.6 Affecting the neuronal system |
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206 | (1) |
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8.4 Strategies of manipulation |
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207 | (6) |
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207 | (1) |
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8.4.2 What manipulation effort? |
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208 | (1) |
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8.4.3 Multiple infections |
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209 | (4) |
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Box 8.1 Immune evasion by Bacillus anthracis |
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184 | (1) |
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Box 8.2 Is manipulation adaptive, and for whom? |
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185 | (2) |
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Box 8.3 Manipulation and evasion in disease space |
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187 | (18) |
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Box 8.4 Manipulation of vertical transmission |
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205 | (8) |
9 Transmission, infection, and pathogenesis |
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213 | (28) |
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213 | (5) |
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9.1.1 Exit points from the host |
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213 | (2) |
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215 | (1) |
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9.1.3 Horizontal vs vertical transmission |
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215 | (2) |
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9.1.4 The evolution of transmission |
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217 | (1) |
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9.2 Variation in infection outcome |
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218 | (1) |
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218 | (11) |
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218 | (6) |
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9.3.2 Generalized models of infection |
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224 | (3) |
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9.3.2.1 Independent action hypothesis (IAH) |
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226 | (1) |
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9.3.2.2 Individual effective dose (threshold models) |
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226 | (1) |
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9.3.2.3 Host heterogeneity models (HHS) |
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226 | (1) |
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9.3.2.4 Within-inoculum interaction models |
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226 | (1) |
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9.3.2.5 Sequential models |
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227 | (1) |
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9.3.3 Process-based models |
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227 | (2) |
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9.3.3.1 The lottery model |
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227 | (1) |
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9.3.3.2 The manipulation hypothesis |
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228 | (1) |
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9.3.3.3 Early infection dynamics |
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229 | (1) |
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9.4 Pathogenesis: The mechanisms of virulence |
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229 | (7) |
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9.4.1 Impairing host capacities |
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229 | (1) |
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9.4.2 Destruction of tissue |
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230 | (2) |
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232 | (1) |
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9.4.3.1 Adhesion factors (adhesins) |
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232 | (1) |
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9.4.3.2 Colonization factors |
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232 | (1) |
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9.4.3.3 Invasion factors (Invasins) |
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232 | (1) |
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9.4.3.4 Immune evasion factors |
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233 | (1) |
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233 | (1) |
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234 | (1) |
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9.4.6 Pathogenesis via the microbiota |
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235 | (1) |
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9.4.7 Pathogenesis by co-infections |
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236 | (1) |
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236 | (5) |
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9.5.1 Immunopathology associated with cytokines |
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238 | (1) |
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9.5.2 Immunopathology caused by immune evasion mechanisms |
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238 | (3) |
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Box 9.1 Infection in disease space |
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220 | (3) |
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Box 9.2 Definitions of dose |
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223 | (1) |
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Box 9.3 Quantitative Microbial Risk Assessment (QMRA) |
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224 | (1) |
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Box 9.4 Formalizing infectious dose in general models |
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225 | (16) |
10 Host-parasite genetics |
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241 | (40) |
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10.1 Genetics and genomics of host-parasite interactions |
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241 | (6) |
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10.1.1 The importance of genetics |
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241 | (1) |
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10.1.2 Genomics and host-parasite genetics |
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242 | (8) |
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242 | (1) |
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10.1.2.2 Reading the genome |
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242 | (1) |
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10.1.2.3 Association with a phenotype |
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242 | (4) |
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10.1.2.4 Changing the genotype |
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246 | (1) |
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10.2 Genetics of host defence |
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247 | (3) |
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250 | (7) |
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250 | (2) |
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10.3.2 Genetics of pathogenic bacteria |
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252 | (5) |
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10.3.2.1 Pathogenicity islands |
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252 | (5) |
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10.3.2.2 PICIs and gene-transfer agents |
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257 | (1) |
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257 | (9) |
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10.4.1 Individual genetic polymorphism |
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257 | (3) |
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10.4.2 Genetic variation in populations |
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260 | (1) |
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261 | (3) |
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10.4.3.1 Expression profile and transcriptome |
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261 | (2) |
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10.4.3.2 Copy number variation |
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263 | (1) |
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10.4.3.3 Phase variation and antigenic variation |
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264 | (1) |
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10.4.4 Heritability of host and pathogen traits |
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264 | (2) |
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10.5 Host-parasite genetic interactions |
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266 | (7) |
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266 | (1) |
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10.5.2 Models of genotypic interactions |
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267 | (6) |
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10.5.2.1 Gene-for-gene interaction (GFG) |
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271 | (1) |
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10.5.2.2 Matching specificities (matching alleles) |
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|
272 | (1) |
|
10.5.3 Role of the microbiota |
|
|
273 | (1) |
|
10.6 Signatures of selection |
|
|
273 | (4) |
|
10.6.1 Selection by parasites in animal populations |
|
|
275 | (1) |
|
10.6.2 Selection by parasites in human populations |
|
|
276 | (1) |
|
10.6.3 Signatures of selection in parasites |
|
|
277 | (1) |
|
10.7 Parasite population genetic structure |
|
|
277 | (4) |
|
10.7.1 Determinants of structure |
|
|
277 | (1) |
|
10.7.2 Genetic exchange in parasites |
|
|
278 | (5) |
|
Box 10.1 Host-parasite interaction in disease space |
|
|
243 | (1) |
|
Box 10.2 Sequencing technologies |
|
|
244 | (20) |
|
Box 10.3 Quantitative genetic effects |
|
|
264 | (3) |
|
Box 10.4 Cross-infection experiments |
|
|
267 | (3) |
|
Box 10.5 Genetic interaction models |
|
|
270 | (4) |
|
Box 10.6 Signatures of selection |
|
|
274 | (7) |
11 Between-host dynamics (Epidemiology) |
|
281 | (36) |
|
11.1 Epidemiology of infectious diseases |
|
|
281 | (2) |
|
11.2 Modelling infectious diseases |
|
|
283 | (16) |
|
|
284 | (7) |
|
11.2.2 Thresholds and vaccination |
|
|
291 | (3) |
|
11.2.3 Stochastic epidemiology |
|
|
294 | (1) |
|
11.2.4 Network analysis of epidemics |
|
|
295 | (4) |
|
11.2.5 Spatial heterogeneity |
|
|
299 | (1) |
|
11.2.6 The epidemic as an invasion process |
|
|
299 | (1) |
|
11.3 Endemic diseases and periodic outbreaks |
|
|
299 | (1) |
|
11.4 Epidemiology of vectored diseases |
|
|
300 | (2) |
|
11.5 Epidemiology of macroparasites |
|
|
302 | (3) |
|
11.5.1 Distribution of macroparasites among hosts |
|
|
302 | (1) |
|
11.5.2 Epidemiological dynamics of macroparasites |
|
|
303 | (2) |
|
11.6 Population dynamics of host-parasitoid systems |
|
|
305 | (1) |
|
11.7 Molecular epidemiology |
|
|
305 | (7) |
|
|
312 | (5) |
|
11.8.1 Effects of immunity on disease dynamics |
|
|
312 | (2) |
|
11.8.2 Inferences from disease dynamics |
|
|
314 | (1) |
|
11.8.3 Immunological markers in epidemiology |
|
|
314 | (7) |
|
Box 11.1 Bernoulli's theory of smallpox |
|
|
283 | (2) |
|
Box 11.2 The basic epidemiological model (SIR) |
|
|
285 | (6) |
|
|
291 | (6) |
|
Box 11.4 Epidemics and disease space |
|
|
297 | (7) |
|
Box 11.5 Epidemiology of macroparasites |
|
|
304 | (2) |
|
|
306 | (2) |
|
Box 11.7 Coronavirus outbreaks |
|
|
308 | (9) |
12 Within-host dynamics and evolution |
|
317 | (36) |
|
12.1 Primary phase of infection |
|
|
317 | (4) |
|
12.2 Within-host dynamics and evolution of parasites |
|
|
321 | (8) |
|
12.2.1 Target cell-limited models |
|
|
321 | (4) |
|
12.2.2 Dynamics in disease space |
|
|
325 | (1) |
|
12.2.3 Strategies of within-host growth |
|
|
326 | (1) |
|
12.2.4 Modelling immune responses |
|
|
326 | (3) |
|
12.2.4.1 Computational immunology |
|
|
326 | (3) |
|
12.2.4.2 Systems immunology |
|
|
329 | (1) |
|
12.3 Within-host evolution |
|
|
329 | (13) |
|
12.3.1 Evolutionary processes in infecting populations |
|
|
330 | (4) |
|
12.3.1.1 Processes of diversification |
|
|
330 | (1) |
|
12.3.1.2 Evolution of bacteria |
|
|
331 | (1) |
|
12.3.1.3 Evolution of viruses |
|
|
332 | (2) |
|
12.3.2 Antigenic variation |
|
|
334 | (1) |
|
12.3.3 Antibiotic resistance |
|
|
335 | (5) |
|
12.3.4 Evolutionary perspectives of antibiotic resistance |
|
|
340 | (2) |
|
|
342 | (5) |
|
12.4.1 Competition within the host |
|
|
342 | (3) |
|
12.4.2 Cooperation within hosts |
|
|
345 | (2) |
|
12.5 Microbiota within the host |
|
|
347 | (1) |
|
12.6 Within- vs between-host episodes |
|
|
348 | (5) |
|
Box 12.1 Signalling theory and infection |
|
|
319 | (2) |
|
Box 12.2 Target cell-limited models |
|
|
321 | (6) |
|
Box 12.3 Predictions for infections from disease space |
|
|
327 | (11) |
|
Box 12.4 Mechanisms of antibiotic resistance in bacteria |
|
|
338 | (8) |
|
Box 12.5 Quorum sensing in bacteria |
|
|
346 | (7) |
13 Virulence evolution |
|
353 | (36) |
|
13.1 The meaning of virulence |
|
|
353 | (1) |
|
13.2 Virulence as a non- or mal-adaptive phenomenon |
|
|
353 | (3) |
|
13.2.1 Virulence as a side effect |
|
|
353 | (1) |
|
13.2.2 Short-sighted evolution |
|
|
354 | (1) |
|
13.2.3 Virulence as a negligible effect for the parasite |
|
|
355 | (1) |
|
|
355 | (1) |
|
13.3 Virulence as an evolved trait |
|
|
356 | (2) |
|
13.4 The standard evolutionary theory of virulence |
|
|
358 | (7) |
|
13.4.1 The basic principle |
|
|
358 | (3) |
|
13.4.2 The recovery-virulence trade-off |
|
|
361 | (1) |
|
13.4.3 The transmission-virulence trade-off |
|
|
362 | (3) |
|
13.5 The ecology of virulence |
|
|
365 | (4) |
|
|
365 | (3) |
|
13.5.2 Host population dynamics |
|
|
368 | (1) |
|
13.6 Host population structure |
|
|
369 | (2) |
|
|
369 | (1) |
|
13.6.2 Variation in host types |
|
|
370 | (1) |
|
|
370 | (1) |
|
13.7 Non-equilibrium virulence: Invasion and epidemics |
|
|
371 | (1) |
|
13.8 Within-host evolution and virulence |
|
|
372 | (4) |
|
13.8.1 Within-host replication and clearance of infection |
|
|
373 | (1) |
|
13.8.2 Within-host evolution: Serial passage |
|
|
373 | (2) |
|
13.8.3 Within-host evolution and virulence in a population |
|
|
375 | (1) |
|
13.9 Multiple infections and parasite interactions |
|
|
376 | (5) |
|
13.9.1 Virulence and competition among parasites |
|
|
376 | (3) |
|
13.9.1.1 Resource competition |
|
|
376 | (2) |
|
13.9.1.2 Apparent competition |
|
|
378 | (1) |
|
13.9.1.3 Interference competition |
|
|
378 | (1) |
|
13.9.2 Cooperation among co-infecting parasites |
|
|
379 | (2) |
|
13.9.2.1 Kinship among parasites |
|
|
379 | (1) |
|
13.9.2.2 Cooperative action |
|
|
379 | (2) |
|
13.10 Additional processes |
|
|
381 | (2) |
|
13.10.1 Medical intervention and virulence |
|
|
381 | (2) |
|
13.10.2 Castration and obligate killers |
|
|
383 | (1) |
|
13.11 Virulence and life history of infection |
|
|
383 | (6) |
|
13.11.1 The timing of benefits and costs |
|
|
383 | (1) |
|
13.11.2 Sensitivity of parasite fitness |
|
|
384 | (5) |
|
Box 13.1 Virulence in disease space |
|
|
357 | (3) |
|
Box 13.2 Extensions to the standard theory |
|
|
360 | (3) |
|
Box 13.3 Virulence evolution with immunopathology |
|
|
363 | (11) |
|
|
374 | (6) |
|
Box 13.5 Kin selection and virulence |
|
|
380 | (9) |
14 Host-parasite co-evolution |
|
389 | (28) |
|
|
389 | (7) |
|
14.1.1 The adapted microbiota |
|
|
389 | (1) |
|
|
390 | (2) |
|
|
392 | (4) |
|
|
396 | (10) |
|
14.2.1 Co-evolutionary scenarios |
|
|
397 | (5) |
|
14.2.1.1 Selective sweeps |
|
|
397 | (2) |
|
|
399 | (1) |
|
14.2.1.3 Antagonistic, time-lagged fluctuations (Red Queen) |
|
|
399 | (1) |
|
14.2.1.4 'Evolution-proof' strategies |
|
|
400 | (2) |
|
14.2.2 Parasites and maintenance of host diversity |
|
|
402 | (4) |
|
14.2.2.1 Host-parasite asymmetry |
|
|
402 | (1) |
|
14.2.2.2 Red Queen and host diversity |
|
|
403 | (2) |
|
14.2.2.3 Trans-species polymorphism |
|
|
405 | (1) |
|
14.3 Parasites, recombination, and sex |
|
|
406 | (6) |
|
14.3.1 Theoretical issues |
|
|
406 | (4) |
|
|
410 | (2) |
|
|
412 | (5) |
|
Box 14.1 Co-evolution and disease space |
|
|
396 | (5) |
|
Box 14.2 History of the Red Queen hypothesis |
|
|
401 | (6) |
|
Box 14.3 The masterpiece of nature: Sex and recombination |
|
|
407 | (10) |
15 Ecology |
|
417 | (36) |
|
15.1 Host ecology and life history |
|
|
417 | (12) |
|
|
417 | (1) |
|
15.1.2 Host reproductive patterns |
|
|
417 | (2) |
|
15.1.3 Host group living and sociality |
|
|
419 | (3) |
|
15.1.4 Regulation of host populations by parasites |
|
|
422 | (3) |
|
15.1.5 Host population decline and extinction |
|
|
425 | (4) |
|
15.2 Host ecological communities |
|
|
429 | (5) |
|
15.2.1 Parasite effects on host competition |
|
|
429 | (1) |
|
15.2.2 Communities of hosts |
|
|
429 | (1) |
|
|
430 | (2) |
|
|
432 | (1) |
|
15.2.5 The value of parasites for hosts |
|
|
433 | (1) |
|
|
434 | (4) |
|
15.3.1 Geographical patterns |
|
|
434 | (2) |
|
15.3.1.1 Relation to area size |
|
|
434 | (1) |
|
15.3.1.2 Latitudinal gradients |
|
|
435 | (1) |
|
15.3.2 Parasite community richness and diversity |
|
|
436 | (2) |
|
15.4 Migration and invasion |
|
|
438 | (4) |
|
|
438 | (1) |
|
|
438 | (4) |
|
15.4.2.1 Enemy release (parasite loss) |
|
|
439 | (1) |
|
15.4.2.2 Parasite spill-over |
|
|
440 | (2) |
|
15.4.2.3 Parasite spill-back |
|
|
442 | (1) |
|
|
442 | (1) |
|
15.5 Zoonoses and disease emergence |
|
|
442 | (8) |
|
|
442 | (2) |
|
|
444 | (4) |
|
15.5.3 Zoonotic human diseases |
|
|
448 | (2) |
|
15.6 Climate change and parasitism |
|
|
450 | (3) |
|
Box 15.1 Basic population ecology |
|
|
423 | (3) |
|
Box 15.2 The African rinderpest epidemic |
|
|
426 | (15) |
|
Box 15.3 Spill-over and disease space |
|
|
441 | (12) |
Bibliography |
|
453 | (76) |
Subject index |
|
529 | (10) |
Taxonomic index |
|
539 | |