Preface to the Fourth Edition |
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ix | |
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one Statistics and Sampling |
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1 | (10) |
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1.1 What Is "Statistics"? |
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1 | (1) |
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1.2 Populations and Samples |
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2 | (1) |
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1.3 Sampling Error: Precision, Accuracy, and Bias |
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3 | (2) |
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1.4 Random Samples and Independence |
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5 | (1) |
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1.5 How to Collect a Random Sample |
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5 | (1) |
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1.5.1 Simple Random Sample |
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5 | (1) |
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1.5.2 Stratified Random Sample |
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6 | (1) |
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1.6 Poor Sampling Designs |
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6 | (1) |
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1.6.1 Convenience Samples |
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6 | (1) |
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7 | (1) |
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7 | (1) |
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7 | (1) |
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7 | (1) |
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8 | (1) |
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Applications in R: Generating Random Numbers |
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8 | (3) |
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two Variables and Data Management |
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11 | (14) |
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11 | (1) |
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2.2 Categorical Variables |
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11 | (1) |
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12 | (1) |
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2.4 Manipulating Numerical Data |
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13 | (5) |
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2.4.1 Transformed Variables |
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13 | (1) |
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14 | (1) |
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2.4.3 Representing Data with Symbols |
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15 | (1) |
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2.4.4 Significant Figures and Rounding Rules |
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15 | (1) |
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2.4.5 Converting Data from Measurement to Ranks |
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16 | (2) |
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2.5 Explanatory and Response Variables |
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18 | (1) |
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18 | (3) |
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18 | (2) |
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2.6.2 Checking the Data for Errors |
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20 | (1) |
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2.6.3 What to Do about Missing Data |
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20 | (1) |
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2.6.4 Final Words of Wisdom |
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20 | (1) |
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21 | (1) |
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21 | (1) |
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22 | (1) |
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Applications in R: Data Transformation |
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22 | (3) |
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three Summarizing Data in Tables and Graphs |
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25 | (14) |
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3.1 Graphical Representation of Numerical Data |
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25 | (3) |
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3.2 How to Create Meaningful Tables |
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28 | (1) |
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3.3 How to Create Meaningful Graphs |
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29 | (1) |
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3.4 Frequency Distributions and Probability Distributions |
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30 | (1) |
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3.5 Frequency Distributions of Discrete Variables |
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30 | (1) |
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3.6 Frequency Distributions of Continuous Variables |
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31 | (2) |
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3.7 Histograms and Their Interpretation |
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33 | (2) |
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3.7.1 Creating a Histogram with Computer Software |
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33 | (1) |
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3.7.2 Data Inspection with Histograms |
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33 | (2) |
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3.8 Cumulative Frequency Distributions |
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35 | (1) |
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36 | (1) |
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36 | (1) |
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37 | (1) |
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Applications in R: Graphing |
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37 | (2) |
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four Descriptive Statistics: Measures of Central Tendency and Dispersion |
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39 | (14) |
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4.1 Sample Statistics and Population Parameters |
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39 | (1) |
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4.2 Measures of Central Tendency |
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40 | (5) |
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40 | (1) |
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40 | (1) |
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40 | (1) |
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41 | (1) |
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41 | (1) |
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4.2.6 Positions of Mean, Median, and Mode in Symmetric and Skewed Distributions |
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42 | (1) |
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4.2.7 Other Measures of Location |
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43 | (2) |
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4.3 Measures of Dispersion |
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45 | (4) |
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45 | (1) |
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4.3.2 Interquartile Range and the Boxplot |
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45 | (1) |
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4.3.3 Standard Deviation (σ, s) |
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46 | (2) |
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48 | (1) |
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4.3.5 Coefficient of Variation |
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48 | (1) |
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49 | (1) |
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49 | (1) |
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49 | (1) |
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50 | (1) |
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Applications in R: Descriptive Statistics |
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50 | (3) |
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five Probability Principles and Discrete Probability Distributions |
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53 | (20) |
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5.1 Classical and Empirical Probability |
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53 | (1) |
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5.2 Division and Subtraction Rules |
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54 | (1) |
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5.3 Counting Possibilities |
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55 | (1) |
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5.4 The Multiplication Rule, Independence, and Conditional Probability |
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56 | (2) |
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5.4.1 Independence of Two Events or Variables |
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57 | (1) |
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5.4.2 Conditional Probability |
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57 | (1) |
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5.5 Conditional Probability: Tree Diagrams and Bayes' Theorem |
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58 | (2) |
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5.6 Addition Rule and Mutually Exclusive Events |
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60 | (1) |
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5.7 The Binomial Distribution |
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61 | (5) |
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5.7.1 The Binomial Formula |
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63 | (1) |
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5.7.2 Cumulative Probability |
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64 | (1) |
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5.7.3 Expected Frequencies |
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64 | (1) |
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5.7.4 Comparison of Observations with Predictions from the Binomial Distribution |
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65 | (1) |
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5.8 The Poisson Distribution |
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66 | (2) |
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A Note about Working Exercises and Using Computer Statistical Packages |
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68 | (1) |
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68 | (1) |
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68 | (1) |
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68 | (1) |
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69 | (1) |
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70 | (1) |
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Applications in R: Probability Functions |
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71 | (2) |
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six Statistical Inference and Hypothesis Testing |
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73 | (8) |
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6.1 Statistical Inference |
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74 | (1) |
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6.2 Statistical Hypotheses |
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74 | (2) |
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6.3 Statistical Decisions and Their Potential Errors |
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76 | (3) |
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76 | (1) |
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6.3.2 Decision to Reject or Fail to Reject, and the Problem of Type I and Type II Errors |
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76 | (1) |
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6.3.3 Power of the Test and What Influences Power |
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77 | (2) |
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6.3.4 What Is Meant by "Significant"? |
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79 | (1) |
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6.4 Application: Steps in Testing a Statistical Hypothesis |
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79 | (1) |
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6.5 Application of Statistics to Some Common Questions in Biology |
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80 | (1) |
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80 | (1) |
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seven Testing Hypotheses about Frequencies |
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81 | (12) |
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7.1 The Chi-Square Goodness-of-Fit Test |
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81 | (3) |
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7.2 The Chi-Square Test of Association |
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84 | (2) |
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7.3 The Fisher Exact Probability Test |
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86 | (2) |
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88 | (1) |
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88 | (1) |
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88 | (2) |
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90 | (1) |
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Applications in R: Tests of Hypotheses about Frequencies |
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91 | (2) |
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eight The Normal Distribution |
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93 | (16) |
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8.1 The Normal Distribution and Its Properties |
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93 | (1) |
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8.1.1 Properties of the Normal Distribution |
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93 | (1) |
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8.2 The Standard Normal Distribution and Use of Z-Scores |
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94 | (3) |
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8.3 Sampling Distributions |
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97 | (3) |
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8.3.1 The Central Limit Theorem |
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98 | (1) |
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8.3.2 Standard Error of the Mean |
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98 | (2) |
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8.4 Testing for Normality |
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100 | (1) |
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8.5 Normal Approximation of the Binomial Distribution |
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101 | (2) |
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8.6 Using the Normal Approximation for Inferences about Proportions |
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103 | (1) |
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8.6.1 Confidence Interval for a Proportion |
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103 | (1) |
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104 | (1) |
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104 | (1) |
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105 | (1) |
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105 | (1) |
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106 | (1) |
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Applications in R: Normality |
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107 | (2) |
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nine Inferences about a Single Population Mean: One-Sample and Paired Comparisons |
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109 | (18) |
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9.1 Questions about the Mean from a Single Population |
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109 | (1) |
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110 | (1) |
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9.3 Estimation: Confidence Interval for μ |
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111 | (2) |
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9.4 Reporting a Sample Mean and Its Variation |
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113 | (1) |
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9.5 Hypothesis Concerning a Single Population Mean |
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113 | (3) |
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113 | (2) |
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9.5.2 One-Tailed vs. Two-Tailed Hypothesis Tests |
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115 | (1) |
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9.6 Matched-Pairs Tests: Think Differences |
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116 | (1) |
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116 | (1) |
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9.8 How to Proceed If the Normality Assumption Is Violated |
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117 | (1) |
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9.9 Nonparametric Tests for Two Related Samples |
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118 | (2) |
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9.9.1 The Wilcoxon Signed Rank Test |
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118 | (1) |
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119 | (1) |
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120 | (1) |
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120 | (1) |
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120 | (1) |
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121 | (1) |
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122 | (1) |
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Applications in R: Single Population Tests |
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123 | (4) |
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ten Inferences Concerning Two Population Means |
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127 | (12) |
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10.1 The t-Test for Two Independent Samples |
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127 | (2) |
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10.2 Confidence Interval for the Difference between Two Population Means |
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129 | (1) |
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10.3 A Nonparametric Test for Two Independent Samples: The Mann-Whitney U Test |
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130 | (2) |
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10.4 Power of the Test: How Large a Sample Is Sufficient? |
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132 | (2) |
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10.4.1 Determining the Sample Size Needed to Detect a Minimum Effect |
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133 | (1) |
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10.4.2 Determining the Minimum Detectable Difference |
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134 | (1) |
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10.5 Review: What Is the Appropriate Statistical Test? |
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134 | (1) |
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135 | (1) |
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135 | (1) |
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135 | (1) |
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136 | (2) |
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Applications in R: Two-Sample Tests |
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138 | (1) |
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eleven Inferences Concerning Means from Multiple Populations: ANOVA |
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139 | (20) |
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11.1 The Rationale of ANOVA: An Illustration |
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139 | (3) |
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11.2 The Assumptions of ANOVA |
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142 | (1) |
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142 | (7) |
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11.3.1 Testing the Null Hypothesis That All Treatment Means Are Equal |
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144 | (2) |
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11.3.2 Multiple Comparisons (Post-hoc) |
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146 | (1) |
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11.3.3 Fixed-Effects ANOVA Using Survey Data |
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147 | (2) |
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11.3.4 One-Way ANOVA Design with Random Effects |
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149 | (1) |
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11.4 Testing the Assumptions of ANOVA |
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149 | (1) |
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11.5 Remedies for Failed Assumptions |
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150 | (3) |
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11.5.1 Transformations in ANOVA |
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151 | (1) |
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11.5.2 Nonparametric Alternative to One-Way ANOVA: The Kruskal-Wallis Test |
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151 | (2) |
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153 | (1) |
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153 | (1) |
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153 | (2) |
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155 | (1) |
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156 | (3) |
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twelve More ANOVA: Randomized Block and Factorial Designs |
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159 | (14) |
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12.1 The Randomized Block Design |
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159 | (3) |
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162 | (1) |
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12.3 The Factorial Design |
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163 | (4) |
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167 | (1) |
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167 | (1) |
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167 | (1) |
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167 | (2) |
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169 | (1) |
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Applications in R: Complex ANOVAs and the Friedman Test |
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170 | (3) |
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thirteen Associations between Continuous Variables: Correlation |
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173 | (12) |
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13.1 Associations or Modeling: When to Use Correlation or Regression |
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174 | (1) |
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13.2 The Pearson Correlation Coefficient |
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174 | (3) |
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13.2.1 Testing the Significance of r |
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177 | (1) |
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13.3 A Correlation Matrix |
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177 | (2) |
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13.4 Nonparametric Correlation Analysis (Spearman's r) |
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179 | (1) |
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180 | (1) |
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180 | (2) |
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182 | (1) |
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Applications in R: Correlations |
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183 | (1) |
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183 | (2) |
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fourteen Modeling the Effects of One Continuous Variable on Another: Regression Analysis |
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185 | (14) |
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14.1 Fundamentals of Simple Linear Regression |
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185 | (1) |
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14.2 Conceptualizing Regression Analysis |
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186 | (1) |
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14.3 Estimating the Regression Parameters |
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187 | (1) |
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14.4 Testing the Significance of the Regression Equation |
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188 | (2) |
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188 | (1) |
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14.4.2 Degrees of Freedom |
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189 | (1) |
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14.4.3 Mean Squares and F-test |
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189 | (1) |
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14.5 Confidence Interval for β |
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190 | (1) |
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14.6 The Coefficient of Determination (r2) |
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190 | (1) |
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14.7 Regression Analysis Using Survey Data |
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191 | (2) |
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193 | (1) |
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193 | (1) |
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14.8.2 Confidence Interval for μy |
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193 | (1) |
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14.9 Checking Assumptions and Remedies for Their Failure |
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194 | (1) |
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14.10 Advanced Regression Techniques |
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195 | (1) |
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196 | (1) |
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196 | (1) |
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196 | (1) |
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196 | (1) |
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Applications in R: Linear Regression |
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197 | (1) |
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198 | (1) |
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fifteen Selecting Appropriate Statistical Procedures |
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199 | (8) |
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15.1 General Process for a Complete Data Analysis |
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199 | (1) |
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15.2 Choosing the Appropriate Statistical Test |
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200 | (1) |
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15.3 Some Statistical Methods Not Covered in Previous Chapters |
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201 | (5) |
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15.3.1 Multivariate Analysis of Variance---MANOVA |
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202 | (1) |
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15.3.2 Logistic Regression |
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202 | (1) |
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203 | (1) |
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15.3.4 Analysis of Spatial Data |
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204 | (1) |
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15.3.5 Resampling Techniques |
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205 | (1) |
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206 | (1) |
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206 | (1) |
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sixteen Experimental Design |
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207 | (8) |
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16.1 Research Questions, Surveys, and Experiments |
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207 | (2) |
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16.1.1 Observational Studies Can Show Pattern, but Not Causation |
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207 | (1) |
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16.1.2 Experimental Error Masks the True Effects We Wish to Uncover |
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208 | (1) |
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16.2 How to Avoid Bias While Testing for Treatment Effects |
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209 | (2) |
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16.2.1 Include Appropriate Controls |
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209 | (1) |
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16.2.2 Randomized Treatments |
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210 | (1) |
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16.2.3 Use Blinding to Prevent Bias in Assessment |
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210 | (1) |
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16.3 How to Reduce Sampling Error and Its Influences |
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211 | (3) |
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16.3.1 The Benefits of Replication |
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211 | (1) |
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16.3.2 Replicates Must Be Independent |
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211 | (1) |
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16.3.3 How Many Replicates Are Needed? |
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212 | (1) |
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16.3.4 Plan to Include More Replicates than You Think You Need |
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213 | (1) |
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16.3.5 Balance Replication among Treatments |
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213 | (1) |
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16.3.6 Use Blocking to Reduce Unexplained Error |
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213 | (1) |
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16.4 Seek Advice from Experts |
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214 | (1) |
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214 | (1) |
Appendix A Statistical Tables |
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215 | (10) |
Appendix B Answers to Practice Exercises |
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225 | (16) |
Appendix C Installing and Running R |
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241 | (6) |
Appendix D Literature Cited |
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247 | (2) |
Index |
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249 | |