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1 Research Tools and Paradigms |
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1 | (10) |
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1 | (1) |
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1.2 Mathematics as a Language and as a Modelling Tool |
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2 | (1) |
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1.3 The Development of Physical Theories |
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3 | (3) |
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1.4 The Development of Brain Science |
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6 | (1) |
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1.5 YAPS! Yet Another Paradigm Shift! |
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7 | (2) |
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9 | (2) |
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2 State of the Art: Mathematical Approaches in Brain Science |
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11 | (22) |
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11 | (1) |
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12 | (2) |
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2.2.1 The Search for the Meaningful Brain States |
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13 | (1) |
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14 | (2) |
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2.3.1 Detailed Biophysical Models of Neurons |
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15 | (1) |
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2.3.2 Models of Neurons Based on Threshold |
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16 | (1) |
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2.4 Modeling Populations of Neurons |
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16 | (10) |
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2.4.1 Artificial Neural Networks |
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17 | (2) |
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19 | (3) |
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2.4.3 Neural Field Models and Neural Masses |
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22 | (1) |
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2.4.4 Biological Synchronization: The Theory of Coupled Oscillators |
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23 | (3) |
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2.5 Large-Scale Brain Modeling |
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26 | (5) |
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2.5.1 Theory of Attractors in Brain Dynamics |
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26 | (2) |
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28 | (1) |
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29 | (1) |
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30 | (1) |
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2.6 Conclusions and Future Directions |
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31 | (2) |
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3 The Categorical Imperative: Category Theory in Cognitive and Brain Science |
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33 | (32) |
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33 | (1) |
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34 | (14) |
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3.2.1 Examples of Categories |
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38 | (3) |
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3.2.2 Definition of Some Key Concepts in the Theory of Categories |
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41 | (7) |
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48 | (3) |
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3.4 Applications of Category Theory in Cognitive and Brain Science |
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51 | (14) |
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3.4.1 The Origins: Rosen's (M,R-Systems) |
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51 | (2) |
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3.4.2 Category Theory in Perception |
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53 | (1) |
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3.4.3 Memory Evolutive Neuronal Systems |
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53 | (4) |
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3.4.4 Category Theory in Knowledge Acquisition and Representation |
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57 | (8) |
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4 Elementary Principles in Cognitive Systems Modeling |
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65 | (20) |
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65 | (1) |
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66 | (2) |
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4.2.1 What Is Reductionism? |
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67 | (1) |
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68 | (6) |
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4.3.1 The Limitations of Formalisation |
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70 | (4) |
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4.4 Emergence on Systems Modeling |
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74 | (5) |
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4.4.1 A Few Notes on Complex Systems |
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75 | (1) |
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4.4.2 A Few Notes on Emergent Properties |
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76 | (3) |
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4.5 Three Principles for Cognitive Systems Modelling |
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79 | (6) |
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4.5.1 Principle of Locality |
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79 | (1) |
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4.5.2 Principle of Hierarchy |
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80 | (2) |
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4.5.3 Principle of Multiplicity |
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82 | (3) |
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5 The Shift Towards Structure |
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85 | (12) |
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85 | (1) |
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85 | (3) |
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5.2.1 The Shepherd's Tale |
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87 | (1) |
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5.3 Categorizing Structured Systems |
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88 | (4) |
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89 | (2) |
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5.3.2 Structured Systems as Categories |
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91 | (1) |
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5.4 An Example of Theoretical Hypothesis in Biological Systems: The Brouwer Theorem |
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92 | (5) |
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6 A General Framework for Representation |
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97 | (12) |
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97 | (1) |
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6.2 Representation is Triadic |
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97 | (4) |
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6.3 A Theory of Representation in Cognitive Systems |
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101 | (4) |
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6.3.1 Structural Commonality in Representation |
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101 | (1) |
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6.3.2 Representation as a Relation of Similarity Between Structured Entities |
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102 | (1) |
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6.3.3 Representation as a Relation of Isomorphism Between Structured Entities |
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103 | (1) |
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6.3.4 Representation as a Relation of Homomorphism Between Structured Entities |
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103 | (1) |
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6.3.5 Representation Implies Structural Similarity or Homomorphism |
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104 | (1) |
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6.4 Theory of Representation Based on Category Theory |
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105 | (4) |
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7 Towards a Theory of Brain Structure and Function |
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109 | (32) |
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109 | (1) |
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7.2 Brain Mappings Have Form and Meaning |
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110 | (5) |
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7.2.1 Sensorimotor Topographic Patterns |
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111 | (2) |
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7.2.2 Meaningful Patterns in the Olfactory Bulb |
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113 | (2) |
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7.3 The Quest for Functional Brain Organization: Historical Account |
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115 | (3) |
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7.3.1 The Old Paradigm: Modularism-Homuncularism |
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117 | (1) |
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7.4 Brain Cognitive Networks |
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118 | (6) |
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7.4.1 Defining Brain Connectivity |
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119 | (2) |
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121 | (2) |
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7.4.3 Cognits, Neurocognitive Networks and Local Populations |
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123 | (1) |
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7.5 Network Based Approach for Brain Connectivity |
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124 | (6) |
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7.5.1 Network Analysis for Brain Connectivity |
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126 | (2) |
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7.5.2 Small World Network |
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128 | (1) |
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7.5.3 Challenges in Network Based Approaches |
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129 | (1) |
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7.6 A Categorical Framework for Network Theory |
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130 | (11) |
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7.6.1 Exploring Motifs with Graph Homomorphisms |
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131 | (2) |
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133 | (2) |
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7.6.3 A Methodology to Study Network Topology via Categories |
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135 | (2) |
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7.6.4 Quantitative Analysis of Clustering and Modularity with Colimits and Limits |
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137 | (2) |
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7.6.5 Seeing Small World and Scale Free Networks with Categorical Lens |
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139 | (2) |
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8 A Theory of Hippocampus Structure and Function Based on Category Theory |
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141 | (20) |
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141 | (1) |
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8.2 The Nature of Spatial Representation |
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141 | (2) |
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8.3 The Hippocampus as a Representational Device |
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143 | (2) |
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8.3.1 The Cognitive Map Hypothesis |
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144 | (1) |
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8.4 The Hippocampus: Anatomy and Connectivity |
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145 | (1) |
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146 | (2) |
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8.5.1 Place Cells as Representational Entities |
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147 | (1) |
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148 | (2) |
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149 | (1) |
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150 | (1) |
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8.8 A Theory of Brain Spatial Representation Based on Category Theory |
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151 | (4) |
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8.8.1 The Category of Neurons |
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151 | (1) |
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8.8.2 The Category of Places |
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152 | (2) |
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8.8.3 Functor Between Neur and Field |
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154 | (1) |
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8.9 A New Framework for Place and Grid Cells |
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155 | (6) |
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8.9.1 Place Field as Colimit of Grid Fields |
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157 | (4) |
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9 From Cells to Memories: A Categorical Approach |
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161 | (6) |
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161 | (1) |
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161 | (2) |
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9.3 A Theory of Declarative Memory Based on Category Theory |
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163 | (4) |
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9.3.1 Categorical Product in Acquisition of Middle Point Concept in 1D Navigation |
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163 | (2) |
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9.3.2 Categorical Pullback in Acquisition of Middle Point Concept in 2D Navigation |
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165 | (1) |
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9.3.3 Pullback and Grid Cell Formation |
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166 | (1) |
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167 | (4) |
References |
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171 | (18) |
Index |
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189 | |