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Bacterial Community Reconstruction Using Compressed Sensing |
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1 | (15) |
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Constrained De Novo Sequencing of Peptides with Application to Conotoxins |
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16 | (15) |
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Metabolic Network Analysis Demystified |
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31 | (3) |
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Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes (Extended Abstract) |
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34 | (4) |
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Hapsembler: An Assembler for Highly Polymorphic Genomes |
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38 | (15) |
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Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome |
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53 | (1) |
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Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks |
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54 | (15) |
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Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast |
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69 | (1) |
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Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways |
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70 | (15) |
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A Probabilistic Model For Sequence Alignment with Context-Sensitive Indels |
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85 | (19) |
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Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes |
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104 | (2) |
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Variable Selection through Correlation Sifting |
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106 | (18) |
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Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions |
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124 | (10) |
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PSAR: Measuring Multiple Sequence Alignment Reliability by Probabilistic Sampling (Extended Abstract) |
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134 | (2) |
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Pedigree Reconstruction Using Identity by Descent |
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136 | (17) |
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A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription |
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153 | (1) |
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Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut |
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154 | (14) |
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IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly (Extended Abstract) |
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168 | (21) |
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Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals |
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189 | (15) |
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Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs |
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204 | (18) |
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A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-oligomers from NOEs and RDCs |
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222 | (16) |
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Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers |
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238 | (14) |
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An Optimization-Based Sampling Scheme for Phylogenetic Trees |
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252 | (15) |
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Multiplex De Novo Sequencing of Peptide Antibiotics |
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267 | (15) |
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Fractal and Transgenerational Genetic Effects on Phenotypic Variation and Disease Risk (Invited Talk) |
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282 | (1) |
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AREM: Aligning Short Reads from ChIP-Sequencing by Expectation Maximization |
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283 | (15) |
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Blocked Pattern Matching Problem and Its Applications in Proteomics |
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298 | (22) |
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A Three-Dimensional Model of the Yeast Genome |
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320 | (1) |
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Optimization of Combinatorial Mutagenesis |
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321 | (15) |
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Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets |
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336 | (1) |
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T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome (Extended Abstract) |
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337 | (2) |
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Experiment Specific Expression Patterns |
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339 | (16) |
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Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles |
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355 | (3) |
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A Ribosome Flow Model for Analyzing Translation Elongation (Extended Abstract) |
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358 | (3) |
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Design of Protein-Protein Interactions with a Novel Ensemble-Based Scoring Algorithm |
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361 | (16) |
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Computing Fragmentation Trees from Metabolite Multiple Mass Spectrometry Data |
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377 | (15) |
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Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction |
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392 | (16) |
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Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble Models |
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408 | (16) |
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Optimally Orienting Physical Networks |
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424 | (13) |
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Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences |
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437 | (15) |
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Increasing Power of Groupwise Association Test with Likelihood Ratio Test |
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452 | (16) |
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Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection |
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468 | (15) |
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Protein Loop Closure Using Orientational Restraints from NMR Data |
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483 | (16) |
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De Novo Discovery of Mutated Driver Pathways in Cancer |
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499 | (2) |
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An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes under Evolutionary Pressure |
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501 | (15) |
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Nonparametric Combinatorial Sequence Models |
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516 | (15) |
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Algorithms for MDC-Based Multi-locus Phylogeny Inference |
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531 | (15) |
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Rich Parameterization Improves RNA Structure Prediction |
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546 | (17) |
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A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data |
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563 | (16) |
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| Author Index |
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579 | |
