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El. knyga: Serum/Plasma Proteomics: Methods and Protocols

  • Formatas: PDF+DRM
  • Serija: Methods in Molecular Biology 1619
  • Išleidimo metai: 03-Jul-2017
  • Leidėjas: Humana Press Inc.
  • Kalba: eng
  • ISBN-13: 9781493970575
Kitos knygos pagal šią temą:
  • Formatas: PDF+DRM
  • Serija: Methods in Molecular Biology 1619
  • Išleidimo metai: 03-Jul-2017
  • Leidėjas: Humana Press Inc.
  • Kalba: eng
  • ISBN-13: 9781493970575
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Over the past decade, there has been an increase in powerful proteomics technologies that allow greater fundamental insights into the blood proteome. Further developments in informatic analyses, software developments, and computational tools are providing insights into large data sets, open-source data along with large-scale application of bioinformatics. Serum/Plasma Proteomics: Methods and Protocols, Second Edition is a comprehensive resource of protocols for areas, pre-analytical through to analytical, of plasma and serum proteomics. Divided into five convenient sections, covering fractionation strategies for in-depth blood proteome analysis, defined procedures for blood collection, handling and storage, detailed protocols for performing both antibody-based and non-antibody based quantitative assays,  proteome analysis of blood cell compartments, circulating nanomebraneous vesicles and blood-related fluids, data management, statistical design, and bioinformatic challenges. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Serum/Plasma Proteomics: Methods and Protocols, Second Edition delivers a valuable foundation for the development and application of blood-based proteomics, and further incorporates blood cell components, including platelets, red blood cells, circulating extracellular vesicles/exosomes, and related biofluids.

Preface v
Contributors xi
Part I Updated Blood Processing and Handling Strategies
1 Direct Assessment of Plasma/Serum Sample Quality for Proteomics Biomarker Investigation
3(20)
Viviana Greco
Cristian Piras
Luisa Pieroni
Andrea Urbani
2 A Protocol for the Preparation of Cryoprecipitate and Cryo-depleted Plasma for Proteomic Studies
23(8)
Rosemary L. Sparrow
Richard J. Simpson
David W. Greening
3 Preparation of Platelet Concentrates for Research and Transfusion Purposes
31(14)
David W. Greening
Richard J. Simpson
Rosemary L. Sparrow
Part II Updated Fractionation Strategies for In-depth Blood Proteome Analysis
4 Bead-Based and Multiplexed Immunoassays for Protein Profiling via Sequential Affinity Capture
45(10)
Elin Birgersson
Jochen M. Schwenk
Burcu Ayoglu
5 Affinity Proteomics for Fast, Sensitive, Quantitative Analysis of Proteins in Plasma
55(8)
John P. O'Grady
Kevin W. Meyer
Derrick N. Poe
6 Characterization of the Low-Molecular-Weight Human Plasma Peptidome
63(18)
David W. Greening
Richard J. Simpson
7 In-Depth, Reproducible Analysis of Human Plasma Using IgY 14 and SuperMix Immunodepletion
81(22)
Lynn A. Beer
Bonnie Ky
Kurt T. Barnhart
David W. Speicher
8 Low-Molecular-Weight Plasma Proteome Analysis Using Top-Down Mass Spectrometry
103(16)
Dong Huey Cheon
Eun Gyeong Yang
Cheolju Lee
Ji Eun Lee
9 Identification of Post-Translational Modifications from Serum/Plasma by Immunoaffinity Enrichment and LC-MS/MS Analysis Without Depletion of Abundant Proteins
119(8)
Hongbo Gu
Jianmin Ren
Xiaoying Jia
Matthew P. Stokes
10 Identification of Core-Fucosylated Glycoproteome in Human Plasma
127(14)
Qichen Cao
Qing Zhao
Xiaohong Qian
Wantao Ting
Part III Updated Proteome Analysis of Blood Cell Components, Vesicles, and Blood-related Fluids
11 Proteomic Analysis of Blood Extracellular Vesicles in Cardiovascular Disease by LC-MS/MS Analysis
141(10)
Montserrat Baldan-Martin
Fernando de la Cuesta
Gloria Alvarez-Llamas
Gema Ruiz-Hurtado
Luis M. Ruilope
Maria G. Barderas
12 Targeted Approach for Proteomic Analysis of a Hidden Membrane Protein
151(22)
Tania Martins-Marques
Sandra L. Anjo
Teresa Ribeiro-Rodrigues
Bruno Manadas
Henrique Girao
13 Red Blood Cells in Clinical Proteomics
173(10)
Ana Sofia Carvalho
Manuel S. Rodriguez
Rune Matthiesen
14 High-Throughput Quantitative Lipidomics Analysis of Nonesterified Fatty Acids in Plasma by LC-MS
183(10)
Nicolas Christinat
Delphine Morin-Rivron
Mojgan Masoodi
15 Simultaneous Enrichment of Plasma Extracellular Vesicles and Glycoproteome for Studying Disease Biomarkers
193(10)
Sunil S. Adav
Siu Kwan Sze
16 Lipidomics of Human Blood Plasma by High-Resolution Shotgun Mass Spectrometry
203(10)
Susanne Sales
Oskar Knittelfelder
Andrej Shevchenko
17 Proteomics Analysis of Circulating Serum Exosomes
213(16)
Antonius Roller
Purvi Patel
Jenny Kim Kim
Emily L. Chen
Part IV Antibody-based Discovery and Targeted Proteomics
18 High-Density Serum/Plasma Reverse Phase Protein Arrays
229(10)
Cecilia Hellstrom
Tea Dodig-Crnkovic
Mun-Gwan Hong
Jochen M. Schwenk
Peter Nilsson
Ronald Sjoberg
19 Antibody Colocalization Microarray for Cross-Reactivity-Free Multiplexed Protein Analysis
239(24)
Veronique Laforte
Pik-Shan Lo
Huiyan Li
David Juncker
20 Surface Profiling of Extracellular Vesicles from Plasma or Ascites Fluid Using DotScan Antibody Microarrays
263(40)
Larissa Belov
Susannah Hallal
Kieran Matic
Jerry Zhou
Sandra Wissmueller
Nuzhat Ahmed
Sumaiya Tanjil
Stephen P. Mulligan
O. Giles Best
Richard J. Simpson
Richard I. Christopherson
21 Serum Profiling for Identification of Autoantibody Signatures in Diseases Using Protein Microarrays
303(16)
Shabarni Gupta
K.P. Manubhai
Shuvolina Mukherjee
Sanjeeva Srivastava
Part V Developments in Discovery and Targeted Proteomics
22 Quantitative Comparisons of Large Numbers of Human Plasma Samples Using TMT10plex Labeling
319(20)
Pengyuan Liu
Lynn A. Beer
Bonnie Ky
Kurt T. Barnbart
David W. Speicher
23 Efficient Quantitative Comparisons of Plasma Proteomes Using Label-Free Analysis with MaxQuant
339(14)
Lynn A. Beer
Pengyuan Liu
Bonnie Ky
Kurt T. Barnbart
David W. Speicher
24 Blood and Plasma Proteomics: Targeted Quantitation and Posttranslational Redox Modifications
353(20)
Julie A. Reisz
Katelyn M. Chessler
Monika Dzieciatkowska
Angelo D'Alessandro
Kirk C. Hansen
25 SWATH Mass Spectrometry for Proteomics of Non-Depleted Plasma
373(12)
Christoph Krisp
Mark P. Molloy
26 Shotgun and Targeted Plasma Proteomics to Predict Prognosis of Non-Small Cell Lung Cancer
385(10)
Qing-Run Li
Yan-Sheng Liu
Rong Zeng
27 High-Throughput Parallel Proteomic Sample Preparation Using 96-Well Polyvinylidene Fluoride (PVDF) Membranes and C18 Purification Plates
395(8)
Tue Bjerg Bennike
Hanno Steen
28 Targeted Quantification of the Glycated Peptides of Human Serum Albumin
403(14)
Garikapati Vannuruswamy
Arvind M. Korwar
Mashanipalya G. Jagadeeshaprasad
Mahesh J. Kulkarni
29 Absolute Quantification of Middle- to High-Abundant Plasma Proteins via Targeted Proteomics
417(16)
Julia Dittrich
Uta Ceglarek
Part VI Developments in Biomarker Discovery
30 A Highly Automated Shotgun Proteomic Workflow: Clinical Scale and Robustness for Biomarker Discovery in Blood
433(18)
Loic Dayon
Antonio Nunez Galindo
Ornella Cominetti
John Corthesy
Martin Kussmann
31 Mass Spectrometry-Based Serum Proteomics for Biomarker Discovery and Validation
451(16)
Santosh D. Bhosale
Robert Moulder
Petri Kouvonen
Riitta Lahesmaa
David R. Goodlett
32 Metabolomics Toward Biomarker Discovery
467(10)
Peiyuan Yin
Guowang Xu
33 Plasma Biomarker Identification and Quantification by Microparticle Proteomics
477(10)
Michal Harel
Tamar Geiger
34 Bronchoalveolar Lavage: Quantitative Mass Spectrometry-Based Proteomics Analysis in Lung Diseases
487(8)
Ana Sofia Carvalho
Rune Matthiesen
35 Protein Multiplexed Immunoassay Analysis with R
495(44)
Edmond J. Breen
Appendix A Standard Operating Procedures for Plasma Collection in Clinical Research 539(4)
Appendix B Standard Operating Procedures for Serum Collection in Clinical Research 543(4)
Appendix C Reference Ranges for Blood Tests Are 1Sorted by Mass and Molarity 547(2)
Index 549