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El. knyga: Serum/Plasma Proteomics: Methods and Protocols

  • Formatas: PDF+DRM
  • Serija: Methods in Molecular Biology 728
  • Išleidimo metai: 06-Apr-2011
  • Leidėjas: Humana Press Inc.
  • Kalba: eng
  • ISBN-13: 9781617790683
Kitos knygos pagal šią temą:
  • Formatas: PDF+DRM
  • Serija: Methods in Molecular Biology 728
  • Išleidimo metai: 06-Apr-2011
  • Leidėjas: Humana Press Inc.
  • Kalba: eng
  • ISBN-13: 9781617790683
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Blood science has become a cornerstone of multiple disciplines, including clinical chemistry, disease diagnosis, and therapeutic monitoring.  Over the past decade, we have witnessed the advent of increasingly powerful proteomics technologies that allow greater fundamental insights into the blood proteome.  These technological improvements have, in part, fuelled the quest for the discovery of novel blood-based biomarkers of disease. Serum/Plasma Proteomics: Methods and Protocols is a comprehensive resource of protocols for areas, pre-analytical through to analytical, of plasma and serum proteomics. Divided into five convenient sections, this detailed volume covers fractionation strategies for in-depth blood proteome analysis, defined procedures for blood collection, handling and storage, detailed protocols for performing both antibody-based and non-antibody based quantitative assays,  proteome analysis of blood cell compartments, circulating nanomebraneous vesicles and blood-related fluids, and finally data management, statistical design, and bioinformatic challenges. This book, contributed to by leading experts in the field, provides a valuable foundation for the development and application of blood-based proteomics. Written in the highly successful Methods in Molecular Biology series format, chapters contain introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.

 

Authoritative and easily accessible, Serum/Plasma Proteomics: Methods and Protocols, with its well-honed methodologies, seeks to serve both professionals and investigators new to thefield in an effort to further our knowledge of this fundamental science.
Preface v
Contributors xi
Part I Fractionation Strategies for In-depth Blood Proteome Analysis
1 Plasma Biomarker Discovery Using 3D Protein Profiling Coupled with Label-Free Quantitation
3(26)
Lynn A. Beer
Hsin-Yao Tang
Kurt T. Barnhart
David W. Speicher
2 Intact Protein Separation by One-and Two-Dimensional Liquid Chromatography for the Comparative Proteomic Separation of Partitioned Serum or Plasma
29(18)
Simon Sheng
Helena Skalnikova
Andrew Meng
John Tra
Qin Fu
Allen Everett
Jennifer Van Eyk
3 In-Depth Analysis of a Plasma or Serum Proteome Using a 4D Protein Profiling Method
47(22)
Hsin-Yao Tang
Lynn A. Beer
David W. Speicher
4 Intact-Protein Analysis System for Discovery of Serum-Based Disease Biomarkers
69(18)
Hong Wang
Samir Hanash
5 Model-Based Discovery of Circulating Biomarkers
87(22)
Maryann S. Vogelsang
Kian Kani
Jonathan E. Katz
Parag Mallick
6 Low-Molecular Weight Plasma Proteome Analysis Using Centrifugal Ultrafiltration
109(16)
David W. Greening
Richard J. Simpson
7 High-Throughput Analysis of Glycoproteins from Plasma
125(12)
Yan Li
Hui Zhang
Part II Blood Collection and Handling Strategies
8 Minimizing Preanalytical Variation of Plasma Samples by Proper Blood Collection and Handling
137(14)
Jizu Yi
David Craft
Craig A. Gelfand
9 Collection and Handling of Blood Specimens for Peptidomics
151(10)
Harald Tammen
Rudiger Hess
10 Investigation of Peptide Biomarker Stability in Plasma Samples Using Time-Course MS Analysis
161(18)
Jizu Yi
Zhaoxia Liu
Craig A. Gelfand
David Craft
Part III Methods for Quantitative Assaying of Blood-Based Biomarkers
11 Biomarker Validation in Blood Specimens by Selected Reaction Monitoring Mass Spectrometry of N-Glycosites
179(16)
Reto Ossola
Ralph Schiess
Paola Picotti
Oliver Rinner
Lukas Reiter
Ruedi Aebersold
12 A Fluorescent Microsphere-Based Method for Assay of Multiple Analytes in Plasma
195(12)
Oliver K. Bernhard
Rommel A. Mathias
Thomas W. Barnes
Richard J. Simpson
13 Immuno-Mass Spectrometry: Quantification of Low-Abundance Proteins in Biological Fluids
207(12)
Vathany Kulasingam
Christopher R. Smith
Ihor Batruch
Eleftherios P. Diamandis
14 Qualitative and Quantitative Analysis of Glycated Proteins in Human Plasma by Glucose Isotopic Labeling with 13C6-Reducing Sugars
219(16)
Feliciano Priego-Capote
Maria Ramirez-Boo
Denis Hochstrasser
Jean-Charles Sanchez
Part IV Proteome Analysis of Blood Cell Components, Vesicles, and Blood-Related Fluids
15 Exosome Isolation for Proteomic Analyses and RNA Profiling
235(12)
Douglas D. Taylor
Wolfgang Zacharias
Cicek Gercel-Taylor
16 Extraction and Proteome Analysis of Liver Tissue Interstitial Fluid
247(12)
Wei Sun
Ying Jiang
Fuchu He
17 A Protocol for the Preparation of Cryoprecipitate and Cryodepleted Plasma
259(8)
Rosemary L. Sparrow
David W. Greening
Richard J. Simpson
18 Preparation of Platelet Concentrates
267(12)
David W. Greening
Rosemary L. Sparrow
Richard J. Simpson
19 Phosphoproteome Analysis of the Platelet Plasma Membrane
279(14)
Thomas Premsler
Urs Lewandrowski
Albert Sickmann
Rene Peiman Zahedi
Part V Bioinformatic Analysis of Blood Proteins and Peptides
20 Statistical Design and Analysis of Label-free LC-MS Proteomic Experiments: A Case Study of Coronary Artery Disease
293(28)
Timothy Clough
Siegmund Braun
Vladimir Fokin
Ilka Ott
Susanne Ragg
Gunther Schadow
Olga Vitek
21 Data Management in Mass Spectrometry-Based Proteomics
321(12)
Lennart Martens
22 Bioinformatics Challenges in the Proteomic Analysis of Human Plasma
333(16)
Joseph M. Foster
Lennart Martens
23 Using the Human Plasma PeptideAtlas to Study Human Plasma Proteins
349(26)
Terry Farrah
Eric W. Deutsch
Ruedi Aebersol
Appendix 375(20)
Index 395