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El. knyga: Wood Degradation and Ligninolytic Fungi

Volume editor (Associate Professor, Universite de Lorraine, France), Volume editor (Professor, Lorraine University, France)
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Wood Degradation and Ligninolytic Fungi, Volume 99 summarizes current knowledge on wood degradation by fungi. Chapters in this new release include Intracellular detoxification strategies of lignolytic fungi, Cell signaling during wood degradation, Evolution of ligninolytic systems in fungi, Diversity and distribution of lignolytic fungi, Fungal catalysts for lignin valorization: applied aspects, Expression of fungal lignocellulolytic genes in the environment, Wood degradation in grapevine disease, Imaging wood degradation, Lignin degradation by ascomycetes, and more.

The increasing interest for wood decaying fungi over the past few years has sparked great potential for their use in biomass valorization, their important function in global carbon cycle, and for the damages they can cause on wood materials, hence this new release includes updates on these and related topics.

  • Based on recent research and genomic data
  • Presents the multidisciplinary aspects of wood degradation
  • Deals with regulation and adaptation of fungi in the complex environment of wood
Contributors ix
Preface xi
1 Diversity and distribution of ligninolytic fungi
1(36)
Inger Skrede
1 Introduction
2(1)
2 Diversity, cryptic species and speciation
2(10)
3 Individuality and population divergence
12(4)
4 Distribution and adaptation
16(10)
5 Conclusions and future perspectives
26(11)
Acknowledgments
27(1)
References
27(10)
2 Evolution of lignin decomposition systems in fungi
37(40)
Dimitrios Floudas
1 Introduction
38(1)
2 Lignin is an abundant biopolymer of terrestrial ecosystems
38(1)
3 Ligninolytic abilities across the fungal tree of life and fungi with diverse ecology
39(3)
4 Gene families involved in lignin degradation
42(2)
5 The appearance of white rot in mushroom forming fungi; a change in the fate of organic carbon
44(8)
6 The evolution of lignin degradation systems in white-rot fungi might have happened in steps
52(2)
7 The appearance of brown-rot fungi and the loss of extensive lignin degradation
54(2)
8 Evolution of mushroom forming fungi with unusual wood decay characteristics
56(1)
9 Evidence for the existence of gradients of ligninolytic abilities in white-rot fungi and litter decomposers
57(2)
10 The transitions to mycorrhizal lifestyles with plants as hosts and the fate of lignin decomposition
59(3)
11 Soft rot and lignin degradation evolution in Ascomycota;a remaining black box
62(1)
12 Open questions in the evolution of lignin degradation in fungi
63(14)
Acknowledgments
65(1)
References
66(11)
3 Lignin degradation by ascomycetes
77(38)
Roselyne Ferrari
Valerie Gautier
Philippe Silar
1 Introduction
78(2)
2 Ascomycetes from many classes of Pezizomycotina are able to decay wood
80(10)
3 Ascomycetes can breakdown "ancient" lignin
90(1)
4 Mining the genomes of ascomycetes for genes involved in lignin degradation
91(2)
5 Enzymes used by ascomycetes to break down lignin
93(7)
6 Conclusion
100(15)
References
101(14)
4 Wood as a hostile habitat for ligninolytic fungi
115(36)
Melanie Morel-Rouhier
1 Introduction
116(1)
2 Wood moisture is one of the most important factors for fungal degradation
116(3)
3 Fungi need to adhere on the wood surface to develop
119(4)
4 Wood structural durability and sugar accessibility to fungi
123(2)
5 Fungi need to cope with wood chemicals
125(14)
6 Conclusion
139(12)
References
139(12)
5 How to rot: A role for TOR. Interplay between carbon catabolite repression and TOR signaling pathway
151(24)
Delphine Noel
Duy Vuong Nguyen
Rodnay Sormani
1 Introduction
152(1)
2 Interplays between glucose-induced carbon catabolite repression pathway and TOR signaling pathway in the yeast S. cerevisiae
153(5)
3 Lessons from the "soft-rot" fungi
158(5)
4 A role for TOR in basidiomycete "white-rot" fungi
163(4)
5 Conclusion
167(8)
References
167(8)
6 Wood degradation in grapevine diseases
175(34)
Marion Schilling
Sibylle Farine
Jean-Pierre Peros
Christophe Bertsch
Eric Gelhaye
1 Introduction
176(4)
2 Grapevine wood properties
180(5)
3 Wood defense mechanisms
185(5)
4 Wood infection by GTD fungi
190(8)
5 Conclusion
198(11)
References
199(10)
7 Wood degradation by Panaque nigrolineatus, a neotropical catfish: diversity and activity of gastrointestinal tract lignocellulolytic and nitrogen fixing communities
209(24)
Joy E.M. Watts
Ryan C. McDonald
Harold J. Schreier
1 Introduction
210(2)
2 P. nigrolineatus anatomy and physiology
212(4)
3 The P. nigrolineatus microbiome
216(2)
4 The active cellulolytic community
218(1)
5 The nitrogen-fixing consortia
219(3)
6 Fungal diversity
222(3)
7 Effect of diet on the enteric microbiome
225(6)
8 Conclusions and future perspectives
231(2)
Acknowledgments 233(1)
References 233
Mélanie Morel-Rouhier is a professor at Lorraine University in France. She did her phD on nitrogen uptake and assimilation in ectomycorrhizas and then moved on heavy metal transport in Arabidopsis thaliana during her post-doc. Since 2008, she is doing her research within the IAM Unit. She is interested in the detoxification systems developed by decaying fungi in the context of wood degradation. During her recent years, she focused on the functional, biochemical and structural characterization of the glutathione transferase superfamily. Thanks to the omics” wave, she is now working on other molecular candidates explaining the stress resistance and adaptation of decay fungi to wood and in particular to the putative antifungal wood extractives. Rodnay Sormani performed his thesis working on regulation of translation in plants under the supervision of Pr. C. Robaglia. As a post doc, he worked on the TOR signaling pathway in plants in the team of Dr. C. Meyer. During his second post-doc, he worked on the cell wall integrity signaling pathway in plants in the team of Dr. H. Hofte. He joined the « Université de Lorraine » as associate professor and as a member of IAM (UMR1136 UL INRAE) working on wood decay by white-rot fungi.
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